Directory

EMBO Global Investigator

EMBO,2024

A*STAR Fellow

A*STAR,2024

SG 100 Women in Tech

2023

A*STAR Fellow

A*STAR,2023

My research interests and expertise include single-cell omics, spatial omics, AI, immunology, and developing novel analytical methods and databases for the integration and analyses of single-cell and spatial omics data.

Deciphering spatial domains from spatial multi-omics with SpatialGlue.

Nature methods – Long Yahui; Ang Kok Siong; Sethi Raman; Liao Sha; Heng Yang; van Olst Lynn; Ye Shuchen; Zhong Chengwei; Xu Hang; Zhang Di; Kwok Immanuel; Husna Nazihah; Jian Min; Ng Lai Guan; Chen Ao; Gascoigne Nicholas R J; Gate David; Fan Rong; Xu Xun; Chen Jinmiao (2024)

ezSingleCell: an integrated one-stop single-cell and spatial omics analysis platform for bench scientists.

Nature communications – Sethi Raman; Ang Kok Siong; Li Mengwei; Long Yahui; Ling Jingjing; Chen Jinmiao (2024)

15 (1);

Unsupervised spatially embedded deep representation of spatial transcriptomics.

Genome medicine – Xu Hang; Fu Huazhu; Long Yahui; Ang Kok Siong; Sethi Raman; Chong Kelvin; Li Mengwei; Uddamvathanak Rom; Lee Hong Kai; Ling Jingjing; Chen Ao; Shao Ling; Liu Longqi; Chen Jinmiao (2024)

16 (1);

Spatially informed clustering, integration, and deconvolution of spatial transcriptomics with GraphST.

Nature communications – Long Yahui; Ang Kok Siong; Li Mengwei; Chong Kian Long Kelvin; Sethi Raman; Zhong Chengwei; Xu Hang; Ong Zhiwei; Sachaphibulkij Karishma; Chen Ao; Zeng Li; Fu Huazhu; Wu Min; Lim Lina Hsiu Kim; Liu Longqi; Chen Jinmiao (2023)

14 (1);

Establishing a human bone marrow single cell reference atlas to study ageing and diseases.

Frontiers in immunology – Lee Nicole Yee Shin; Li Mengwei; Ang Kok Siong; Chen Jinmiao (2023)

14

DISCO: a database of Deeply Integrated human Single-Cell Omics data.

Nucleic acids research – Li Mengwei; Zhang Xiaomeng; Ang Kok Siong; Ling Jingjing; Sethi Raman; Lee Nicole Yee Shin; Ginhoux Florent; Chen Jinmiao (2022)

50 (D1); D596-D602

A benchmark of batch-effect correction methods for single-cell RNA sequencing data.

Genome biology – Tran Hoa Thi Nhu; Ang Kok Siong; Chevrier Marion; Zhang Xiaomeng; Lee Nicole Yee Shin; Goh Michelle; Chen Jinmiao (2020)

21 (1);

A Single-Cell Sequencing Guide for Immunologists.

Frontiers in immunology – See Peter; Lum Josephine; Chen Jinmiao; Ginhoux Florent (2018)

9

Constructing cell lineages from single-cell transcriptomes.

Molecular aspects of medicine – Chen Jinmiao; Rénia Laurent; Ginhoux Florent (2018)

59 95-113

Mapping the human DC lineage through the integration of high-dimensional techniques.

Science (New York, N.Y.) – See Peter; Dutertre Charles-Antoine; Chen Jinmiao; Günther Patrick; McGovern Naomi; Irac Sergio Erdal; Gunawan Merry; Beyer Marc; Händler Kristian; Duan Kaibo; Sumatoh Hermi Rizal Bin; Ruffin Nicolas; Jouve Mabel; Gea-Mallorquí Ester; Hennekam Raoul C M; Lim Tony; Yip Chan Chung; Wen Ming; Malleret Benoit; Low Ivy; Shadan Nurhidaya Binte; Fen Charlene Foong Shu; Tay Alicia; Lum Josephine; Zolezzi Francesca; Larbi Anis; Poidinger Michael; Chan Jerry K Y; Chen Qingfeng; Rénia Laurent; Haniffa Muzlifah; Benaroch Philippe; Schlitzer Andreas; Schultze Joachim L; Newell Evan W; Ginhoux Florent (2017)

356 (6342);

Mpath maps multi-branching single-cell trajectories revealing progenitor cell progression during development.

Nature communications – Chen Jinmiao; Schlitzer Andreas; Chakarov Svetoslav; Ginhoux Florent; Poidinger Michael (2016)

7

Cytofkit: A Bioconductor Package for an Integrated Mass Cytometry Data Analysis Pipeline.

PLoS computational biology – Chen Hao; Lau Mai Chan; Wong Michael Thomas; Newell Evan W; Poidinger Michael; Chen Jinmiao (2016)

12 (9);

Mapping the Diversity of Follicular Helper T Cells in Human Blood and Tonsils Using High-Dimensional Mass Cytometry Analysis.

Cell reports – Wong Michael T; Chen Jinmiao; Narayanan Sriram; Lin Wenyu; Anicete Rosslyn; Kiaang Henry Tan Kun; De Lafaille Maria Alicia Curotto; Poidinger Michael; Newell Evan W (2015)

11 (11); 1822-1833

High-dimensional analysis of the murine myeloid cell system.

Nature immunology – Becher Burkhard; Schlitzer Andreas; Chen Jinmiao; Mair Florian; Sumatoh Hermi R; Teng Karen Wei Weng; Low Donovan; Ruedl Christiane; Riccardi-Castagnoli Paola; Poidinger Michael; Greter Melanie; Ginhoux Florent; Newell Evan W (2014)

15 (12); 1181-1189

Mapping of HPV transcripts in four human cervical lesions using RNAseq suggests quantitative rearrangements during carcinogenic progression.

Virology – Chen Jinmiao; Xue Yuezhen; Poidinger Michael; Lim Thimothy; Chew Sung Hock; Pang Chai Ling; Abastado Jean-Pierre; Thierry Françoise (2014)

462-463 14-24

Segmented-memory recurrent neural networks.

IEEE transactions on neural networks – Chen Jinmiao; Chaudhari Narendra S (2009)

20 (8); 1267-1280

Cascaded bidirectional recurrent neural networks for protein secondary structure prediction.

IEEE/ACM transactions on computational biology and bioinformatics – Chen Jinmiao; Chaudhari Narendra (2007)

4 (4); 572-582

Bidirectional segmented-memory recurrent neural network for protein secondary structure prediction

Soft Computing – Jinmiao Chen and Narendra S. Chaudhari (2005)

10 315-324

Deterministic reprogramming of neutrophils within tumors.

Science (New York, N.Y.) – Ng Melissa S F; Kwok Immanuel; Tan Leonard; Shi Changming; Cerezo-Wallis Daniela; Tan Yingrou; Leong Keith; Calvo Gabriel F; Yang Katharine; Zhang Yuning; Jin Jingsi; Liong Ka Hang; Wu Dandan; He Rui; Liu Dehua; Teh Ye Chean; Bleriot Camille; Caronni Nicoletta; Liu Zhaoyuan; Duan Kaibo; Narang Vipin; Ballesteros Iván; Moalli Federica; Li Mengwei; Chen Jinmiao; Liu Yao; Liu Lianxin; Qi Jingjing; Liu Yingbin; Jiang Lingxi; Shen Baiyong; Cheng Hui; Cheng Tao; Angeli Veronique; Sharma Ankur; Loh Yuin-Han; Tey Hong Liang; Chong Shu Zhen; Iannacone Matteo; Ostuni Renato; Hidalgo Andrés; Ginhoux Florent; Ng Lai Guan (2024)

383 (6679);

iPS-cell-derived microglia promote brain organoid maturation via cholesterol transfer.

Nature – Park Dong Shin; Kozaki Tatsuya; Tiwari Satish Kumar; Moreira Marco; Khalilnezhad Ahad; Torta Federico; Olivié Nicolas; Thiam Chung Hwee; Liani Oniko; Silvin Aymeric; Phoo Wint Wint; Gao Liang; Triebl Alexander; Tham Wai Kin; Gonçalves Leticia; Kong Wan Ting; Raman Sethi; Zhang Xiao Meng; Dunsmore Garett; Dutertre Charles Antoine; Lee Salanne; Ong Jia Min; Balachander Akhila; Khalilnezhad Shabnam; Lum Josephine; Duan Kaibo; Lim Ze Ming; Tan Leonard; Low Ivy; Utami Kagistia Hana; Yeo Xin Yi; Di Tommaso Sylvaine; Dupuy Jean-William; Varga Balazs; Karadottir Ragnhildur Thora; Madathummal Mufeeda Changaramvally; Bonne Isabelle; Malleret Benoit; Binte Zainab Yasin; Wei Da Ngan; Tan Yingrou; Wong Wei Jie; Zhang Jinqiu; Chen Jinmiao; Sobota Radoslaw M; Howland Shanshan W; Ng Lai Guan; Saltel Frédéric; Castel David; Grill Jacques; Minard Veronique; Albani Salvatore; Chan Jerry K Y; Thion Morgane Sonia; Jung Sang Yong; Wenk Markus R; Pouladi Mahmoud A; Pasqualini Claudia; Angeli Veronique; Cexus Olivier N F; Ginhoux Florent (2023)

623 (7986); 397-405